
File list:
functions
........\backwards2forwards.m
........\backwards2forwards_2d_double.c
........\backwards2forwards_2d_double.m
........\backwards2forwards_3d_double.c
........\backwards2forwards_3d_single.c
........\fminlbfgs.m
........\image_difference.m
........\imgaussian.c
........\imgaussian.m
........\imresize3d.m
........\inversegrid.m
........\MakeDiffeomorphic.m
........\make_grid_image.m
........\make_init_grid.m
........\maple_penalties_smoothing_2d.mw
........\maple_penalties_smoothing_3d.mw
........\maxNumCompThreads.c
........\maxNumCompThreads.m
........\mutual_histogram_double.c
........\mutual_histogram_double.m
........\mutual_histogram_single.c
........\penalties_smoothness.m
........\penalty_matrix.mat
........\refine_grid.m
........\showcs3.fig
........\showcs3.m
........\squared_difference_double.c
........\squared_difference_double.m
........\squared_difference_single.c
........\strain.m
functions_affine
...............\affine_error_3d_double.c
...............\affine_error_3d_single.c
...............\affine_parameter_scaling.m
...............\affine_registration_error.m
...............\affine_registration_image.m
...............\affine_transform.m
...............\affine_transform_2d_double.c
...............\affine_transform_2d_double.m
...............\affine_transform_3d_double.c
...............\affine_transform_3d_single.c
...............\image_interpolation.c
...............\image_interpolation.h
...............\make_transformation_matrix.m
...............\multiple_os_thread.h
functions_nonrigid
.................\bspline_coefficients.m
.................\bspline_error_2d_double.c
.................\bspline_error_3d_double.c
.................\bspline_error_3d_single.c
.................\bspline_grid_fitting.m
.................\bspline_registration_gradient.m
.................\bspline_registration_image.m
.................\bspline_transform.m
.................\bspline_transform_2d_double.c
.................\bspline_transform_2d_double.m
.................\bspline_transform_3d_double.c
.................\bspline_transform_3d_single.c
.................\bspline_trans_points_double.m
.................\image_interpolation.c
.................\image_interpolation.h
.................\image_interpolation.m
.................\jacobiandet_cost_gradient.m
.................\jacobiandet_error_2d_double.c
.................\jacobiandet_error_2d_double.m
.................\jacobiandet_error_3d_double.c
.................\jacobiandet_transform_2d_double.c
.................\jacobiandet_transform_2d_double.m
.................\jacobiandet_transform_3d_double.c
.................\movepixels.m
.................\movepixels_2d_double.c
.................\movepixels_2d_double.m
.................\movepixels_3d_double.c
.................\movepixels_3d_single.c
.................\multiple_os_thread.h
images
.....\brain1.png

.....\brain2.png

.....\brain3.png

.....\landmarks.mat
.....\landmarks1.png

.....\landmarks2.png

.....\lena.jpg

.....\lenag1.png

.....\lenag2.png

.....\lenag3.png

.....\lenag4.png

.....\prostate1.png

.....\prostate2.png

.....\star1.png

.....\star2.png

.....\starpoints.mat
.....\Thumbs.db
low_level_examples
.................\addpaths.m
.................\example_2d_affine.m
.................\example_2d_nonrigid_1.m
.................\example_2d_nonrigid_2.m
.................\example_2d_nonrigid_3.m
.................\example_3d_affine.m
.................\example_3d_nonrigid.m
.................\get_example_data.m
compile_c_files.m
image_registration.m
license.txt
manually_warp_images.fig
manually_warp_images.m
point_registration.m