ParMol consists of the four graph miners MoFa, gSpan, FFSM and Gaston. Each of them has its own package.




File list:
ParMol_1346_2006-08-01
.....................\.settings
.....................\.........\org.eclipse.jdt.core.prefs
.....................\.........\org.eclipse.jdt.ui.prefs
.....................\de
.....................\..\parmol
.....................\..\......\FFSM
.....................\..\......\....\test
.....................\..\......\....\....\FFSMTest.class
.....................\..\......\....\....\FFSMTest.java
.....................\..\......\....\Embedding.class
.....................\..\......\....\Embedding.java
.....................\..\......\....\EmbeddingList.class
.....................\..\......\....\EmbeddingList.java
.....................\..\......\....\FFSMDFSSearch.class
.....................\..\......\....\FFSMDFSSearch.java
.....................\..\......\....\FFSMSearchTreeNode.class
.....................\..\......\....\FFSMSearchTreeNode.java
.....................\..\......\....\GraphEdge.class
.....................\..\......\....\GraphEdge.java
.....................\..\......\....\JoinerAndExtender.class
.....................\..\......\....\JoinerAndExtender.java
.....................\..\......\....\Matrix.class
.....................\..\......\....\Matrix.java
.....................\..\......\....\Miner.class
.....................\..\......\....\Miner.java
.....................\..\......\Gaston
.....................\..\......\......\CycleRefinement.class
.....................\..\......\......\CycleRefinement.java
.....................\..\......\......\DataBase$FreqLabel.class
.....................\..\......\......\DataBase.class
.....................\..\......\......\DataBase.java
.....................\..\......\......\DepthRefinement.class
.....................\..\......\......\DepthRefinement.java
.....................\..\......\......\EdgeNodeRelabler.class
.....................\..\......\......\EdgeNodeRelabler.java
.....................\..\......\......\Embedding.class
.....................\..\......\......\Embedding.java
.....................\..\......\......\GastonCycle.class
.....................\..\......\......\GastonCycle.java
.....................\..\......\......\GastonPath.class
.....................\..\......\......\GastonPath.java
.....................\..\......\......\GastonSet.class
.....................\..\......\......\GastonSet.java
.....................\..\......\......\GastonTree.class
.....................\..\......\......\GastonTree.java
.....................\..\......\......\Leg$1.class
.....................\..\......\......\Leg.class
.....................\..\......\......\Leg.java
.....................\..\......\......\LegSet.class
.....................\..\......\......\LegSet.java
.....................\..\......\......\Miner.class
.....................\..\......\......\Miner.java
.....................\..\......\......\Refinement.class
.....................\..\......\......\Refinement.java
.....................\..\......\graph
.....................\..\......\.....\test
.....................\..\......\.....\....\GraphSearcherTest$1.class
.....................\..\......\.....\....\GraphSearcherTest$2.class
.....................\..\......\.....\....\GraphSearcherTest.class
.....................\..\......\.....\....\GraphSearcherTest.java
.....................\..\......\.....\....\ListGraphTest.class
.....................\..\......\.....\....\ListGraphTest.java
.....................\..\......\.....\....\MatrixGraphTest.class
.....................\..\......\.....\....\MatrixGraphTest.java
.....................\..\......\.....\....\SimpleGraphComparatorTest.class
.....................\..\......\.....\....\SimpleGraphComparatorTest.java
.....................\..\......\.....\....\SimpleGraphParserTest.class
.....................\..\......\.....\....\SimpleGraphParserTest.java
.....................\..\......\.....\....\SimpleSubgraphComparatorTest.class
.....................\..\......\.....\....\SimpleSubgraphComparatorTest.java
.....................\..\......\.....\....\UtilTest.class
.....................\..\......\.....\....\UtilTest.java
.....................\..\......\.....\ClassifiedDirectedListGraph$Factory.class
.....................\..\......\.....\ClassifiedDirectedListGraph.class
.....................\..\......\.....\ClassifiedDirectedListGraph.java
.....................\..\......\.....\ClassifiedDirectedMatrixGraph$Factory.class
.....................\..\......\.....\ClassifiedDirectedMatrixGraph.class
.....................\..\......\.....\ClassifiedDirectedMatrixGraph.java
.....................\..\......\.....\ClassifiedGraph.class
.....................\..\......\.....\ClassifiedGraph.java
.....................\..\......\.....\ClassifiedGraphFactory.class
.....................\..\......\.....\ClassifiedGraphFactory.java
.....................\..\......\.....\ClassifiedUndirectedListGraph$Factory.class
.....................\..\......\.....\ClassifiedUndirectedListGraph.class
.....................\..\......\.....\ClassifiedUndirectedListGraph.java
.....................\..\......\.....\ClassifiedUndirectedMatrixGraph$Factory.class
.....................\..\......\.....\ClassifiedUndirectedMatrixGraph.class
.....................\..\......\.....\ClassifiedUndirectedMatrixGraph.java
.....................\..\......\.....\CompleteEmbedding$Factory.class
.....................\..\......\.....\CompleteEmbedding.class
.....................\..\......\.....\CompleteEmbedding.java
.....................\..\......\.....\DefaultGraphClassifier.class
.....................\..\......\.....\DefaultGraphClassifier.java
.....................\..\......\.....\DirectedGraph.class
.....................\..\......\.....\DirectedGraph.java
.....................\..\......\.....\DirectedListGraph$Factory.class
.....................\..\......\.....\DirectedListGraph.class
.....................\..\......\.....\DirectedListGraph.java
.....................\..\......\.....\DirectedMatrixGraph$Factory.class
.....................\..\......\.....\DirectedMatrixGraph.class
.....................\..\......\.....\DirectedMatrixGraph.java
.....................\..\......\.....\EdgeOnlyEmbedding.class
.....................\..\......\.....\EdgeOnlyEmbedding.java
.....................\..\......\.....\EmbeddingList.class
.....................\..\......\.....\EmbeddingList.java
.....................\..\......\.....\Graph.class
.....................\..\......\.....\Graph.java
.....................\..\......\.....\GraphClassifier.class
.....................\..\......\.....\GraphClassifier.java
.....................\..\......\.....\GraphEdgeComparator.class
.....................\..\......\.....\GraphEdgeComparator.java
.....................\..\......\.....\GraphEmbedding.class
.....................\..\......\.....\GraphEmbedding.java
.....................\..\......\.....\GraphFactory.class
.....................\..\......\.....\GraphFactory.java
.....................\..\......\.....\GraphNodeComparator.class
.....................\..\......\.....\GraphNodeComparator.java
.....................\..\......\.....\GraphSearcher.class
.....................\..\......\.....\GraphSearcher.java
.....................\..\......\.....\IDEmbedding.class
.....................\..\......\.....\IDEmbedding.java
.....................\..\......\.....\LabelRegistry.class
.....................\..\......\.....\LabelRegistry.java
.....................\..\......\.....\ListGraph.class
.....................\..\......\.....\ListGraph.java
.....................\..\......\.....\MatrixGraph.class
.....................\..\......\.....\MatrixGraph.java
.....................\..\......\.....\MaximumClique$1.class
.....................\..\......\.....\MaximumClique$2.class
.....................\..\......\.....\MaximumClique$3.class
.....................\..\......\.....\MaximumClique$CliqueNode.class
.....................\..\......\.....\MaximumClique$MutableWeightedCliqueNode.class
.....................\..\......\.....\MaximumClique.class
.....................\..\......\.....\MaximumClique.java
.....................\..\......\.....\MutableGraph.class
.....................\..\......\.....\MutableGraph.java
.....................\..\......\.....\NodeEmbedding.class
.....................\..\......\.....\NodeEmbedding.java
.....................\..\......\.....\NodeLabelDegreeComparator.class
.....................\..\......\.....\NodeLabelDegreeComparator.java
.....................\..\......\.....\SimpleEdgeComparator.class
.....................\..\......\.....\SimpleEdgeComparator.java
.....................\..\......\.....\SimpleGraphComparator.class
.....................\..\......\.....\SimpleGraphComparator.java
.....................\..\......\.....\SimpleNodeComparator.class
.....................\..\......\.....\SimpleNodeComparator.java
.....................\..\......\.....\SimpleSubgraphComparator.class
.....................\..\......\.....\SimpleSubgraphComparator.java
.....................\..\......\.....\SubgraphEdgeComparator.class
.....................\..\......\.....\SubgraphEdgeComparator.java
.....................\..\......\.....\SubgraphNodeComparator.class
.....................\..\......\.....\SubgraphNodeComparator.java
.....................\..\......\.....\UndirectedGraph.class
.....................\..\......\.....\UndirectedGraph.java
.....................\..\......\.....\UndirectedListGraph$Factory.class
.....................\..\......\.....\UndirectedListGraph.class
.....................\..\......\.....\UndirectedListGraph.java
.....................\..\......\.....\UndirectedMatrixGraph$Factory.class
.....................\..\......\.....\UndirectedMatrixGraph.class
.....................\..\......\.....\UndirectedMatrixGraph.java
.....................\..\......\.....\Util$1.class
.....................\..\......\.....\Util$2.class
.....................\..\......\.....\Util$FirstNodeComparator.class
.....................\..\......\.....\Util$MISNode.class
.....................\..\......\.....\Util$SecondNodeComparator.class
.....................\..\......\.....\Util$TooManyCyclesException.class
.....................\..\......\.....\Util.class
.....................\..\......\.....\Util.java
.....................\..\......\GSpan
.....................\..\......\.....\test
.....................\..\......\.....\....\DFSCodeTest.class
.....................\..\......\.....\....\DFSCodeTest.java
.....................\..\......\.....\....\GSpanEdgeTest.class
.....................\..\......\.....\....\GSpanEdgeTest.java
.....................\..\......\.....\DataBase$1.class
.....................\..\......\.....\DataBase$Tuple.class
.....................\..\......\.....\DataBase.class
.....................\..\......\.....\DataBase.java
.....................\..\......\.....\DFSCode$1.class
.....................\..\......\.....\DFSCode.class
.....................\..\......\.....\DFSCode.java
.....................\..\......\.....\EdgeNodeRelabler.class
.....................\..\......\.....\EdgeNodeRelabler.java
.....................\..\......\.....\Extension.class
.....................\..\......\.....\Extension.java
.....................\..\......\.....\ExtensionSet.class
.....................\..\......\.....\ExtensionSet.java
.....................\..\......\.....\GraphSet.class
.....................\..\......\.....\GraphSet.java
.....................\..\......\.....\GSpanEdge.class
.....................\..\......\.....\GSpanEdge.java
.....................\..\......\.....\GSpanGraph$1.class
.....................\..\......\.....\GSpanGraph.class
.....................\..\......\.....\GSpanGraph.java
.....................\..\......\.....\Miner.class
.....................\..\......\.....\Miner.java
.....................\..\......\.....\Relabler.class
.....................\..\......\.....\Relabler.java
.....................\..\......\MoFa
.....................\..\......\....\test
.....................\..\......\....\....\MoFaTest.class
.....................\..\......\....\....\MoFaTest.java
.....................\..\......\....\BlackNodeSet.class
.....................\..\......\....\BlackNodeSet.java
.....................\..\......\....\CompleteMoFaEmbedding$Factory.class
.....................\..\......\....\CompleteMoFaEmbedding.class
.....................\..\......\....\CompleteMoFaEmbedding.java
.....................\..\......\....\DirectedListRingGraph$Factory.class
.....................\..\......\....\DirectedListRingGraph.class
.....................\..\......\....\DirectedListRingGraph.java
.....................\..\......\....\DirectedMatrixRingGraph$Factory.class
.....................\..\......\....\DirectedMatrixRingGraph.class
.....................\..\......\....\DirectedMatrixRingGraph.java
.....................\..\......\....\EdgeExtension.class
.....................\..\......\....\EdgeExtension.java
.....................\..\......\....\EdgeNodeExtension.class
.....................\..\......\....\EdgeNodeExtension.java
.....................\..\......\....\Extender.class
.....................\..\......\....\Extender.java
.....................\..\......\....\Extension.class
.....................\..\......\....\Extension.java
.....................\..\......\....\ExtensionContainer$SubContainer.class
.....................\..\......\....\ExtensionContainer.class
.....................\..\......\....\ExtensionContainer.java
.....................\..\......\....\Miner$1.class
.....................\..\......\....\Miner$NodeFrequency.class
.....................\..\......\....\Miner.class
.....................\..\......\....\Miner.java
.....................\..\......\....\MoFaDFSSearch$1.class
.....................\..\......\....\MoFaDFSSearch.class
.....................\..\......\....\MoFaDFSSearch.java
.....................\..\......\....\MoFaEmbedding.class
.....................\..\......\....\MoFaEmbedding.java
.....................\..\......\....\MoFaExtender.class
.....................\..\......\....\MoFaExtender.java
.....................\..\......\....\MoFaSearchTreeNode.class
.....................\..\......\....\MoFaSearchTreeNode.java
.....................\..\......\....\RingGraph.class
.....................\..\......\....\RingGraph.java
.....................\..\......\....\UndirectedListRingGraph$Factory.class
.....................\..\......\....\UndirectedListRingGraph.class
.....................\..\......\....\UndirectedListRingGraph.java
.....................\..\......\....\UndirectedMatrixRingGraph$Factory.class
.....................\..\......\....\UndirectedMatrixRingGraph.class
.....................\..\......\....\UndirectedMatrixRingGraph.java
.....................\..\......\parsers
.....................\..\......\.......\antlr
.....................\..\......\.......\.....\Dot.g
.....................\..\......\.......\.....\DotLexer.class
.....................\..\......\.......\.....\DotLexer.java
.....................\..\......\.......\.....\DotLexerTokenTypes.class
.....................\..\......\.......\.....\DotLexerTokenTypes.java
.....................\..\......\.......\.....\DotLexerTokenTypes.txt
.....................\..\......\.......\.....\DotParser$EdgeDesc.class
.....................\..\......\.......\.....\DotParser.class
.....................\..\......\.......\.....\DotParser.java
.....................\..\......\.......\test
.....................\..\......\.......\....\DotParserTest.class
.....................\..\......\.......\....\DotParserTest.java
.....................\..\......\.......\....\SLNParserTestCase.class
.....................\..\......\.......\....\SLNParserTestCase.java
.....................\..\......\.......\....\SmilesParserTestCase.class
.....................\..\......\.......\....\SmilesParserTestCase.java
.....................\..\......\.......\DotGraphParser.class
.....................\..\......\.......\DotGraphParser.java
.....................\..\......\.......\GraphParser.class
.....................\..\......\.......\GraphParser.java
.....................\..\......\.......\LineGraphParser.class
.....................\..\......\.......\LineGraphParser.java
.....................\..\......\.......\NeatoParser.class
.....................\..\......\.......\NeatoParser.java
.....................\..\......\.......\SDFParser.class
.....................\..\......\.......\SDFParser.java
.....................\..\......\.......\SimpleDirectedGraphParser.class
.....................\..\......\.......\SimpleDirectedGraphParser.java
.....................\..\......\.......\SimpleUndirectedGraphParser.class
.....................\..\......\.......\SimpleUndirectedGraphParser.java
.....................\..\......\.......\SLNParser.class
.....................\..\......\.......\SLNParser.java
.....................\..\......\.......\SmilesParser.class
.....................\..\......\.......\SmilesParser.java
.....................\..\......\search
.....................\..\......\......\test
.....................\..\......\......\....\ThreadedBFSSearchTest$Settings.class
.....................\..\......\......\....\ThreadedBFSSearchTest.class
.....................\..\......\......\....\ThreadedBFSSearchTest.java
.....................\..\......\......\DFSSearchable.class
.....................\..\......\......\DFSSearchable.java
.....................\..\......\......\SearchManager.class
.....................\..\......\......\SearchManager.java
.....................\..\......\......\SearchTreeNode.class
.....................\..\......\......\SearchTreeNode.java
.....................\..\......\......\SearchTreeNodeStack.class
.....................\..\......\......\SearchTreeNodeStack.java
.....................\..\......\......\ThreadedDFSSearch.class
.....................\..\......\......\ThreadedDFSSearch.java
.....................\..\......\util
.....................\..\......\....\BitMatrix.class
.....................\..\......\....\BitMatrix.java
.....................\..\......\....\Debug.class
.....................\..\......\....\Debug.java
.....................\..\......\....\DefaultGraphSet$1.class
.....................\..\......\....\DefaultGraphSet.class
.....................\..\......\....\DefaultGraphSet.java
.....................\..\......\....\DefaultObjectPool.class
.....................\..\......\....\DefaultObjectPool.java
.....................\..\......\....\EmbeddingSet$1.class
.....................\..\......\....\EmbeddingSet.class
.....................\..\......\....\EmbeddingSet.java
.....................\..\......\....\ExtendedComparator.class
.....................\..\......\....\ExtendedComparator.java
.....................\..\......\....\FileConverter.class
.....................\..\......\....\FileConverter.java
.....................\..\......\....\FilteredFragmentSet.class
.....................\..\......\....\FilteredFragmentSet.java
.....................\..\......\....\FragmentSet$1.class
.....................\..\......\....\FragmentSet$2.class
.....................\..\......\....\FragmentSet$3.class
.....................\..\......\....\FragmentSet.class
.....................\..\......\....\FragmentSet.java
.....................\..\......\....\FrequentFragment.class
.....................\..\......\....\FrequentFragment.java
.....................\..\......\....\FullIntMatrix.class
.....................\..\......\....\FullIntMatrix.java
.....................\..\......\....\GraphGenerator.class
.....................\..\......\....\GraphGenerator.java
.....................\..\......\....\GraphSet.class
.....................\..\......\....\GraphSet.java
.....................\..\......\....\HalfIntMatrix.class
.....................\..\......\....\HalfIntMatrix.java
.....................\..\......\....\IntMatrix.class
.....................\..\......\....\IntMatrix.java
.....................\..\......\....\IntQueue.class
.....................\..\......\....\IntQueue.java
.....................\..\......\....\IntStack.class
.....................\..\......\....\IntStack.java
.....................\..\......\....\Math.class
.....................\..\......\....\Math.java
.....................\..\......\....\MutableInteger.class
.....................\..\......\....\MutableInteger.java
.....................\..\......\....\MutableWeighter.class
.....................\..\......\....\MutableWeighter.java
.....................\..\......\....\ObjectPool.class
.....................\..\......\....\ObjectPool.java
.....................\..\......\....\ObjectStack.class
.....................\..\......\....\ObjectStack.java
.....................\..\......\....\ThreadedObjectPool.class
.....................\..\......\....\ThreadedObjectPool.java
.....................\..\......\visualization
.....................\..\......\.............\Block$BlockPoint.class
.....................\..\......\.............\Block.class
.....................\..\......\.............\Block.java
.....................\..\......\.............\BondAndLabelDrawing.class
.....................\..\......\.............\BondAndLabelDrawing.java
.....................\..\......\.............\Chain.class
.....................\..\......\.............\Chain.java
.....................\..\......\.............\ColorSchema.class
.....................\..\......\.............\ColorSchema.java
.....................\..\......\.............\colorschema.props
.....................\..\......\.............\CrossPoint.class
.....................\..\......\.............\CrossPoint.java
.....................\..\......\.............\Cycle.class
.....................\..\......\.............\Cycle.java
.....................\..\......\.............\DataAnalyser.class
.....................\..\......\.............\DataAnalyser.java
.....................\..\......\.............\Demo.class
.....................\..\......\.............\Demo.java
.....................\..\......\.............\DrawingUnit.class
.....................\..\......\.............\DrawingUnit.java
.....................\..\......\.............\DrawingUtil.class
.....................\..\......\.............\DrawingUtil.java
.....................\..\......\.............\FunctionalGroupsProperties.class
.....................\..\......\.............\FunctionalGroupsProperties.java
.....................\..\......\.............\Node.class
.....................\..\......\.............\Node.java
.....................\..\......\.............\Settings.class
.....................\..\......\.............\Settings.java
.....................\..\......\.............\VectorElement.class
.....................\..\......\.............\VectorElement.java
.....................\..\......\AbstractMiner$1.class
.....................\..\......\AbstractMiner.class
.....................\..\......\AbstractMiner.java
.....................\..\......\Demo$1.class
.....................\..\......\Demo.class
.....................\..\......\Demo.java
.....................\..\......\Settings.class
.....................\..\......\Settings.java
.....................\..\......\Statistics.class
.....................\..\......\Statistics.java
.....................\..\......\Util.class
.....................\..\......\Util.java
.....................\ext-libs+srcs
.....................\jackal
.....................\......\runtime
.....................\......\.......\RuntimeSystem.class
.....................\......\.......\RuntimeSystem.java
.....................\META-INF
.....................\........\MANIFEST.MF
.....................\.classpath
.....................\.project
.....................\build.xml
.....................\CHANGES
.....................\COPYING
.....................\Manifest.mf